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Analysing Ecological Data

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2007-12-05No history Add My version 
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This is a mindmap about Analysing Ecological Data 
 
outline 
Analysing Ecological Data
  Univariate tree models
  Introduction
  Pruning the tree
  Classification trees
  Generalised linear modelling
  Poisson regression
  Logistic regression
  Methodes of analysis
  Principal component analysis and redundancy analysis
  Common trends and sudden changes
  Repeated LOESS smoothing
  Identifying the seasonal component
  Common trends: MAFA
  Common trends: Dynamic factor analysis
  Sudden changes: Chronological clustering
  Real systems analisis
  Correspondence analysis and canonical correspondence analysis
  Additive and generalised additive modelling
  Mixed modelling
  The random intercept and slope model
  Model selection and validation
  A bit of theory
  Another mixed modelling example
  Additive mixed modelling
  Methodes and algorithms of ecological analysis
  Monitoring for change
 >>Note: Using generalised least squares, non-metric multidimensional scaling, and the Mantel test on western Montana grasslands
 
  Linear regression results
  Generalised least squares results
  Multivariate analysis results
 Analysing Ecological Data
 Zuur, Alain F., Ieno, Elena N., Smith, Graham M.
 >>New Map
 Real ecosystems analisis
  Univariate and multivariate analysis applied on a Dutch sandy beach community
  Analysing the data using univariate methods
  Analysing the data using multivariate methods
  Discussion and conclusions
  Investigating the effects of rice farming on aquatic birds with mixed modelling
  Getting familiar with the data
 >>Note: Exploration
  Building a mixed model
  The optimal model in terms of random components
  Validating the optimal linear mixed model
  Multivariate analyses of South-American zoobenthic species - spoilt for choice
  Introduction and the underlying questions
  Study site and sample collection
  The Mantel test approach
  The transformation plus RDA approach
  Principal component analysis applied to harbour porpoise fatty acid data
  Principal component analysis
  Principal component analysis results
  Simpler alternatives to PCA
  Univariate methods to analyse abundance of decapod larvae
  Linear regression results
  Additive modelling results
  How many samples to take?
  Canonical correspondence analysis of lowland pasture vegetation in the humid tropics of Mexico
  Canonical correspondence analysis
  African star grass
  Estimating common trends in Portuguese fisheries landings
  MAFA and DFA
  MAFA results
  DFA results
  Spatial modelling of forest community features in the Volzhsko-Kamsky reserve
  Models of boreality without spatial auto-correlation
  Models of boreality with spatial auto-correlation
  Sea level change and salt marshes in the Wadden Sea: A time series analysis
  Interaction between hydrodynamical and biological factors
  Additive mixed modeling
  Time series analysis of Hawaiian waterbirds
  Endangered Hawaiian waterbirds
  Three ways to estimate trends
  Additive mixed modelling
  Sudden breakpoints
  Analysing presence and absence data for flatfish distribution in the Tagus estuary, Portugal
  Generalised additive modeling
  Generalised linear modeling
  Crop pollination by honeybees in Argentina using additive mixed modelling
  Abstracting the information
  Additive mixed modeling
  Common trends in demersal communities on the Newfoundland-Labrador Shelf
  Classification trees and radar detection of birds for North Sea wind farms
  From radars to data
  Classification trees
  A tree for the birds
  A tree for birds, clutter and more clutter
  Multivariate analyses of morphometric turtle data - size and shape
  Classic approaches related to PCA
  Applying PCA to the original turtle data
  Classic morphometric data analysis
  A geometric morphometric approach
  Redundancy analysis and additive modelling applied on savanna tree data
  Fish stock identification through neural network analysis of parasite fauna
  Horse mackerel in the northeast Atlantic
  Neural network
 Analysing Ecological Data
 Zuur, Alain F., Ieno, Elena N., Smith, Graham M.
 >>New Map
 Principal component analysis and redundancy analysis
  The underlying principle of PCA
  PCA
  Two easy explanations
  Two technical explanations
  PCA regression to deal with collinearity
  The biplot
  Chord and Hellinger transformations
  Explanatory variables
  Redundancy analysis
  Partial RDA and variance partitioning
 Analysing Ecological Data
 Zuur, Alain F., Ieno, Elena N., Smith, Graham M.
 >>New Map
 Additive and generalised additive modelling
  The additive model
  Estimate the smoother and amount of smoothing
  Additive models with multiple explanatory variables
  Choosing the amount of smoothing
  Model selection and validation
  Generalised additive modelling
  Where to go from here
 Analysing Ecological Data
 Zuur, Alain F., Ieno, Elena N., Smith, Graham M.
 >>New Map
 Methodes and algorithms of ecological analysis
  Data management and software
  Introduction
  Data management
  Data preparation
  Statistical software
  Exploration
  Outliers
  Transformations
  Standardizations
  Linear regression
  Bivariate linear regression
  Multiple linear regression
  Partial linear regression
  Introduction
  Applied statistical theory
  The case studies
  Data
  Software
  Flowcharts
  Ordination
  Bray-Curtis ordination
  Measures of association
  Q and R analysis
  Association among species: R analysis
  Association between sites: Q analysis
  Hypothesis testing with measures of association
 Analysing Ecological Data
 Zuur, Alain F., Ieno, Elena N., Smith, Graham M.
 >>New Map
 Correspondence analysis and canonical correspondence analysis
  When to use PCA, CA, RDA or CCA
  Three rationales for correspondence analysis
  Gaussian regression and extensions
  Understanding the CCA triplot
  Problems with CA and CCA
  From RGR to CCA
 Analysing Ecological Data
 Zuur, Alain F., Ieno, Elena N., Smith, Graham M.
 >>New Map
 Methodes of analysis
  Analysis and modelling of lattice data
  Lattice data
  Numerical representation of the lattice structure
  Spatial correlation
  Modelling lattice data
  More exotic models
  Discriminant analysis
  Assumptions
  The mathematics
  The numerical output for the sparrow data
  Principal coordinate analysis and non-metric multidimensional scaling
  Principal coordinate analysis
  Non-metric multidimensional scaling
  Time series analysis
  Using what we have already seen before
  Auto-regressive integrated moving average models with exogenous variables
  Spatially continuous data analysis and modeling
  Spatially continuous data
  Geostatistical functions and assumptions
  Exploratory variography analysis
  Geostatistical modelling: Kriging
  A full spatial analysis of the bird radar data
 Analysing Ecological Data
 Zuur, Alain F., Ieno, Elena N., Smith, Graham M.