Analysing Ecological Data |
| Generalised linear modelling |
| Principal component analysis and redundancy analysis |
| Common trends and sudden changes |
| Identifying the seasonal component |
| Common trends: Dynamic factor analysis |
| Sudden changes: Chronological clustering |
| Correspondence analysis and canonical correspondence analysis |
| Additive and generalised additive modelling |
| The random intercept and slope model |
| Model selection and validation |
| Another mixed modelling example |
| Methodes and algorithms of ecological analysis |
| >>Note: Using generalised least squares, non-metric multidimensional scaling, and the Mantel test on western Montana grasslands |
| Linear regression results |
| Generalised least squares results |
| Multivariate analysis results |
| Analysing Ecological Data |
| Zuur, Alain F., Ieno, Elena N., Smith, Graham M. |
| Univariate and multivariate analysis applied on a Dutch sandy beach community |
| Analysing the data using univariate methods |
| Analysing the data using multivariate methods |
| Discussion and conclusions |
| Investigating the effects of rice farming on aquatic birds with mixed modelling |
| Getting familiar with the data |
| The optimal model in terms of random components |
| Validating the optimal linear mixed model |
| Multivariate analyses of South-American zoobenthic species - spoilt for choice |
| Introduction and the underlying questions |
| Study site and sample collection |
| The transformation plus RDA approach |
| Principal component analysis applied to harbour porpoise fatty acid data |
| Principal component analysis |
| Principal component analysis results |
| Simpler alternatives to PCA |
| Univariate methods to analyse abundance of decapod larvae |
| Linear regression results |
| Additive modelling results |
| How many samples to take? |
| Canonical correspondence analysis of lowland pasture vegetation in the humid tropics of Mexico |
| Canonical correspondence analysis |
| Estimating common trends in Portuguese fisheries landings |
| Spatial modelling of forest community features in the Volzhsko-Kamsky reserve |
| Models of boreality without spatial auto-correlation |
| Models of boreality with spatial auto-correlation |
| Sea level change and salt marshes in the Wadden Sea: A time series analysis |
| Interaction between hydrodynamical and biological factors |
| Time series analysis of Hawaiian waterbirds |
| Endangered Hawaiian waterbirds |
| Three ways to estimate trends |
| Analysing presence and absence data for flatfish distribution in the Tagus estuary, Portugal |
| Generalised additive modeling |
| Generalised linear modeling |
| Crop pollination by honeybees in Argentina using additive mixed modelling |
| Abstracting the information |
| Common trends in demersal communities on the Newfoundland-Labrador Shelf |
| Classification trees and radar detection of birds for North Sea wind farms |
| A tree for birds, clutter and more clutter |
| Multivariate analyses of morphometric turtle data - size and shape |
| Classic approaches related to PCA |
| Applying PCA to the original turtle data |
| Classic morphometric data analysis |
| A geometric morphometric approach |
| Redundancy analysis and additive modelling applied on savanna tree data |
| Fish stock identification through neural network analysis of parasite fauna |
| Horse mackerel in the northeast Atlantic |
| Analysing Ecological Data |
| Zuur, Alain F., Ieno, Elena N., Smith, Graham M. |
| Principal component analysis and redundancy analysis |
| The underlying principle of PCA |
| Two technical explanations |
| PCA regression to deal with collinearity |
| Chord and Hellinger transformations |
| Partial RDA and variance partitioning |
| Analysing Ecological Data |
| Zuur, Alain F., Ieno, Elena N., Smith, Graham M. |
| Additive and generalised additive modelling |
| Estimate the smoother and amount of smoothing |
| Additive models with multiple explanatory variables |
| Choosing the amount of smoothing |
| Model selection and validation |
| Generalised additive modelling |
| Analysing Ecological Data |
| Zuur, Alain F., Ieno, Elena N., Smith, Graham M. |
| Methodes and algorithms of ecological analysis |
| Data management and software |
| Bivariate linear regression |
| Multiple linear regression |
| Partial linear regression |
| Applied statistical theory |
| Association among species: R analysis |
| Association between sites: Q analysis |
| Hypothesis testing with measures of association |
| Analysing Ecological Data |
| Zuur, Alain F., Ieno, Elena N., Smith, Graham M. |
| Correspondence analysis and canonical correspondence analysis |
| When to use PCA, CA, RDA or CCA |
| Three rationales for correspondence analysis |
| Gaussian regression and extensions |
| Understanding the CCA triplot |
| Analysing Ecological Data |
| Zuur, Alain F., Ieno, Elena N., Smith, Graham M. |
| Analysis and modelling of lattice data |
| Numerical representation of the lattice structure |
| The numerical output for the sparrow data |
| Principal coordinate analysis and non-metric multidimensional scaling |
| Principal coordinate analysis |
| Non-metric multidimensional scaling |
| Using what we have already seen before |
| Auto-regressive integrated moving average models with exogenous variables |
| Spatially continuous data analysis and modeling |
| Spatially continuous data |
| Geostatistical functions and assumptions |
| Exploratory variography analysis |
| Geostatistical modelling: Kriging |
| A full spatial analysis of the bird radar data |
| Analysing Ecological Data |
| Zuur, Alain F., Ieno, Elena N., Smith, Graham M. |
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